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exoplasim-upstream-import

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• ddcec8d81b Fixing indexing bug for view angles Adiv Paradise 2022-03-03 12:33:06 -05:00
• 8a4a7de7fb Bugfix Adiv Paradise 2022-03-03 12:22:38 -05:00
• 3f055c6aa0 Bugfixes for pRT.image; turning up the smoothing a bit. Adiv Paradise 2022-03-03 12:07:57 -05:00
• bc465524b0 Bugfix in disk-averaging Adiv Paradise 2022-03-02 18:45:18 -05:00
• 05057fa4b4 Adding diagnostic print statements and fixing absolute path Adiv Paradise 2022-03-02 12:45:06 -05:00
• 57148cdac7 Changing cmf.csv to absolute path Adiv Paradise 2022-03-01 21:57:36 -05:00
• 88312f37a1 Fix colormatch import Adiv Paradise 2022-03-01 21:48:46 -05:00
• 8e61c8c7c8 Missing cloud mass fraction Adiv Paradise 2022-03-01 19:11:31 -05:00
• 1e12ebee6f Syntax errors in pRT._imgcolumn Adiv Paradise 2022-03-01 18:56:22 -05:00
• efd7ade808 Bugfix in pRT._imgcolumn Adiv Paradise 2022-03-01 18:52:43 -05:00
• dab1d5bce5 Bugfix in pRT.image Adiv Paradise 2022-03-01 18:47:56 -05:00
• 21bc64403c Bugfixes in pRT.image Adiv Paradise 2022-03-01 18:42:40 -05:00
• 57347ccc43 Fixing shape error in pRT.image Adiv Paradise 2022-03-01 18:32:36 -05:00
• dcdd03f6bf Auxiliary routines for gravitational settling subroutine Maureen Cohen 2022-03-01 20:12:07 +00:00
• d683529847 Small changes, potential bugfixes Adiv Paradise 2022-02-28 17:17:40 -05:00
• c683228d8d Added missing import Adiv Paradise 2022-02-22 10:50:29 -06:00
• aaaf7d0f82 Adding true-color computation, and fixing missing imports Adiv Paradise 2022-02-22 10:38:42 -06:00
• 23523e11ed Adding petitRADTRANS integration Adiv Paradise 2022-02-21 15:44:25 -06:00
• aeb66aaf43 Fixed tuple bug in glacier arguments Adiv Paradise 2021-10-29 15:04:49 -04:00
• 1b647c47b2 Increased build resiliency that checks for broken/incomplete builds and reruns configure.sh if the compiler rules aren't properly there. Also added xcolorbar routine to gcmt.py, which provides better colorbar label text size support. Adiv Paradise 2021-10-26 16:46:19 -04:00
• 68f75f1492 0 CO2 shouldn't be the default (300 ppm should be), and adding resiliency to SimBA for if CO2 IS zero Adiv Paradise 2021-09-29 17:59:26 -04:00
• e8be90dc7b Fixed allocation bug in simba.f90 Adiv Paradise 2021-09-29 17:42:50 -04:00
• b2f8011785 Bugfix Adiv Paradise 2021-09-29 17:12:45 -04:00
• 3b57f18e05 Bugfix Adiv Paradise 2021-09-29 17:08:49 -04:00
• f30f2380ad bugfix Adiv Paradise 2021-09-29 17:07:31 -04:00
• 7233cc2131 Making base surface spectra accessible to the Python layer Adiv Paradise 2021-09-29 17:02:11 -04:00
• c59357b293 Bringing forward and linking in the vegetation module Adiv Paradise 2021-09-28 17:27:48 -04:00
• e53a0f111a Clarified Colaboratory support in documentation Adiv Paradise 2021-09-22 16:36:31 -04:00
• 3f2bf6ed3a Support for Mac OS X 'Big Sur', and fixed a bug where time-averaged data wouldn't be saved across a restart, leading to errors in the first month of time-averaged output after a restart Adiv Paradise 2021-09-22 16:20:47 -04:00
• 714b449bab Bugfix Adiv Paradise 2021-09-17 16:04:17 -04:00
• 034b919729 Bugfix Adiv Paradise 2021-09-17 15:56:14 -04:00
• 221f95d35b Fixed compression problem; exoplasim now uses dynamic compression for netcdf that preserves >=6 significant digits past the decimal point Adiv Paradise 2021-09-17 15:47:36 -04:00
• 5875570c07 Fixed data precision bug where netCDF output would zero out values smaller than 10^-6 Adiv Paradise 2021-09-17 14:27:30 -04:00
• 3764253d78 Update version number Adiv Paradise 2021-09-15 21:14:29 -04:00
• 57668608e5 Removing most.x generation to finalize divorce from X11 Adiv Paradise 2021-09-15 21:12:32 -04:00
• 9920d19f65 Fixing cross-platform compatibility issue sometimes caused by use of gfortran -dumpversion Adiv Paradise 2021-09-15 21:02:31 -04:00
• 5e29382c4f Fixed bug in Model.finalize() that would occur when using numpy output format, such that metadata would be presented as sole output file. Also adding tweaks to glaciermod to aid initial ice sheet stability. Adiv Paradise 2021-09-13 20:04:35 -04:00
• 998023075a Updated version number and documentation for 3.0 major release Adiv Paradise 2021-09-10 18:37:22 -04:00
• 9016df2d79 Fixed RST error Adiv Paradise 2021-09-10 15:32:02 -04:00
• 9f1e2624f5 Previous makefile changes weren't saved Adiv Paradise 2021-09-10 15:25:00 -04:00
• 903c481882 Repairing bugs introduced by attempting to disconnect X11 dependency Adiv Paradise 2021-09-10 15:02:10 -04:00
• d872a0a960 Updating compilation dependencies for newer versions of GCC Adiv Paradise 2021-09-10 14:10:12 -04:00
• f1a54dc15e Removed pumax and GUI from compile step; this removes dependence on X11 Adiv Paradise 2021-09-03 17:52:54 -05:00
• 561d70da18 Fixed type bug in carbonmod, added note on OS compatibility Adiv Paradise 2021-09-03 17:29:29 -05:00
• 85bfd5d33c Fixed BSD/GNU non-compatibility problem at the compile step related to the sed command Adiv Paradise 2021-09-01 18:24:15 -04:00
• 89b31dbd42 Added tutorial jupyter notebook Adiv Paradise 2021-08-19 03:04:25 -04:00
• 1c673abc61 Updated documentation Adiv Paradise 2021-08-19 02:47:04 -04:00
• 5ada492313 Fixing platform compatibility problems with platforms that may have a) old versions of numpy and/or b) multiple different compiler options; GNU is now hard-coded. Adiv Paradise 2021-08-19 02:42:11 -04:00
• 1e7ea00b58 Fixed typo in pyburn Adiv Paradise 2021-08-19 01:51:35 -04:00
• abde2997b8 Fixing burn7 purge, and improving python 3 version compatibility Adiv Paradise 2021-08-19 01:40:33 -04:00
• 10f30e512c Repairing broken f2py configuration component Adiv Paradise 2021-08-19 01:27:27 -04:00
• 425fb7139b Updating version number Adiv Paradise 2021-08-19 00:57:42 -04:00
• cd676aa4c4 Continuing Burn7 purge Adiv Paradise 2021-08-19 00:56:59 -04:00
• 4f3b425a49 Fixed unit error Adiv Paradise 2021-08-18 23:59:23 -04:00
• ec45a38fab Fixed bug in pyburn streamfunction Adiv Paradise 2021-08-18 23:14:39 -04:00
• 5a128adc3d Fixing compatibility issues with versions of python3 and f2py3 Adiv Paradise 2021-08-18 22:34:10 -04:00
• 2e27f0a587 Updating documentation Adiv Paradise 2021-08-18 20:16:15 -04:00
• 488f564f1b Updated version number; updated documentation to reflect burn7 exclusion Adiv Paradise 2021-08-18 19:54:38 -04:00
• 42b08adb57 Removing burn7 netcdf libraries and support for burn7. Burn7 support is now available exclusively through exoplasim-legacy. Adiv Paradise 2021-08-18 19:51:07 -04:00
• 1efe164e90 Replaced the janky source path determination with a more-pythonic approach (accessing the __file__ variable) Adiv Paradise 2021-08-18 19:29:05 -04:00
• b9920a5821 Resolving circular import by moving globally-required variable SUPPORTED into its own module Adiv Paradise 2021-08-18 18:40:55 -04:00
• 96d913e10e Fixing import errors for python<3.7 Adiv Paradise 2021-08-18 18:18:09 -04:00
• 3b86593db5 Replacing streamfunction computation with one that gives the correct answer; updating computation in gcmt as well Adiv Paradise 2021-08-18 17:43:43 -04:00
• 4275d6bc5a Reverting previous; like an idiot forgot exoplasim's default substellarlon is 180 degrees, not 0. Changed pyburn defaults to match. Adiv Paradise 2021-08-18 01:47:22 -04:00
• 803113476e Adjusting pyburn coordinate transform so substellar point is 90 degrees N Adiv Paradise 2021-08-18 01:42:54 -04:00
• 0434f53433 Fixing broken setup version Adiv Paradise 2021-08-18 01:12:15 -04:00
• d76b5ce6b8 pyburn bugfix Adiv Paradise 2021-08-18 01:08:20 -04:00
• 0898b799f6 Fixing gcmt import error in pyburn Adiv Paradise 2021-08-18 00:44:55 -04:00
• 09283d395b Updated version Adiv Paradise 2021-08-18 00:09:46 -04:00
• 256c10a576 Fixing some compilation errors, plus general bugfixes Adiv Paradise 2021-08-18 00:08:52 -04:00
• ca1d88ba46 Bugfix for subprocess call in python3 Adiv Paradise 2021-08-17 22:43:03 -04:00
• f143bb0005 Pruning references to burn7 Adiv Paradise 2021-08-17 20:47:27 -04:00
• 5f3c856cdf Updated documentation Adiv Paradise 2021-08-17 19:49:51 -04:00
• 0ed275d516 Problem appears fixed; removing debugging blocks. Adiv Paradise 2021-08-17 19:28:13 -04:00
• ef44779604 Fix type error in pyburn Adiv Paradise 2021-08-17 19:19:01 -04:00
• 98f54a7397 Updated documentation; bugfixing Adiv Paradise 2021-08-17 19:06:35 -04:00
• 8f1d71a8ec Updated postprocessor documentation; debugging Adiv Paradise 2021-08-17 18:54:03 -04:00
• 278e323820 We don't need to crash if variables and namelist provided to pyburn are both None; that should revert to default behavior. Adiv Paradise 2021-08-17 17:06:33 -04:00
• 9217820a90 Replaced namelists as the default postprocessor configuration; fixed bounds errors in certain cases in pyburn Adiv Paradise 2021-08-17 16:43:59 -04:00
• 79476ac494 Bugfix; fixing pyfft compilation error Adiv Paradise 2021-08-17 15:06:44 -04:00
• 9b3bdec699 Fixing python 2 compatibility problem for pyfft library Adiv Paradise 2021-08-17 14:08:15 -04:00
• 16a241af8d Hopefully fixed (likely) pyfft import error Adiv Paradise 2021-08-16 20:45:55 -04:00
• 3f146aca7a Fixed Python 2 compatibility issue Adiv Paradise 2021-08-16 20:36:24 -04:00
• 51ceefdbab Bugfix to compilation step Adiv Paradise 2021-08-16 20:28:36 -04:00
• 93d4c87f17 Fixing import errors Adiv Paradise 2021-08-16 20:20:42 -04:00
• 28c3b88605 Fixing import errors Adiv Paradise 2021-08-16 20:18:00 -04:00
• 00a1b1f232 Fixes to documentation Adiv Paradise 2021-08-16 20:07:11 -04:00
• eeef4a1897 Updated dependency list Adiv Paradise 2021-08-16 19:34:08 -04:00
• f25308fd56 Fixed namelist-reading issue in pyburn Adiv Paradise 2021-08-16 19:22:14 -04:00
• 16ff19dc03 Postprocessor fully-written and integrated. Utility added to gcmt to read any and all exoplasim output archives and return them in a format-agnostic way. burn7 replaced with pyburn as the default postprocessor. Also added crash tolerance to run routines, so ExoPlaSim can (optionally) recover from crashes on its own. Adiv Paradise 2021-08-16 19:15:42 -04:00
• b1a4fe4ec2 Added standard deviation computation Adiv Paradise 2021-08-05 20:38:02 -04:00
• f504849aa9 Pyburn postprocessor fully-written; needs testing. All derived variables now included, and support added for NumPy, CSV, tarballed, and HDF5 output formats. ExoPlaSim initial compilation script configure.sh now includes compilation of pyfft f2py bindings. f2py3 is currently used; need to check if python 2 will work. Adiv Paradise 2021-08-05 20:24:16 -04:00
• 5ae851d1ce new postprocessor nearly finished; spectral work outsourced to fortran kernel (lifted from plasim internals). Need to add standard deviation computation and support for numpy savez output. Adiv Paradise 2021-07-30 20:15:36 -04:00
• aa95ff8007 Bugfix Adiv Paradise 2021-07-10 14:16:07 -04:00
• 430a718ea4 Similar improvements; more robust precision support Adiv Paradise 2021-07-10 14:14:49 -04:00
• 954c082d02 Improved cross-machine support (32-bit vs 64-bit) Adiv Paradise 2021-07-10 14:07:55 -04:00
• 4b0a1396b8 Building a Python postprocessor, pyburn.py Adiv Paradise 2021-07-10 13:57:54 -04:00
• 2ac909fcc1 Fixed py2>py3 conversion bug in randomcontinents.py, and added a compilation flag to force use of fft991mod.f90 instead of fftmod.f90 (only expert users should play with this). Adiv Paradise 2021-07-10 11:38:57 -04:00
• ca83676601 Forgot version updates Adiv Paradise 2021-04-30 21:09:51 -04:00
• 74c48e9f31 Fixed bugs related to specifying stellar spectrum through a .dat file Adiv Paradise 2021-04-30 21:05:46 -04:00